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Blueberry Lime Cheesecake Cupcakes

Published: Feb 25, 2026 by Cheryl · This post may contain affiliate links · Leave a Comment

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I make these Blueberry Lime Cheesecake Cupcakes when I want something creamy, tangy, and fresh in a perfectly portioned dessert. I combine smooth cheesecake filling with bright lime zest and juicy blueberries, all layered over a buttery graham cracker crust. Every bite feels light yet indulgent, with a refreshing citrus finish.

Blueberry Lime Cheesecake Cupcakes

Ingredients

(Tip: You'll find the full list of ingredients and measurements in the recipe card below.)

Crust:

1 cup graham cracker crumbs (or digestive biscuits)

2 tablespoon melted butter

Cheesecake Filling:

8 oz (225g) cream cheese, softened

¼ cup sugar

1 egg

Zest of 1 lime

1 tablespoon lime juice

½ cup fresh blueberries

Blueberry Swirl (Optional):

¼ cup blueberries

1 tablespoon sugar

Whipped Topping:

½ cup heavy cream

2 tablespoon powdered sugar

Lime zest for garnish

Directions

I start by preheating the oven to 325°F (160°C) and lining a muffin tin with cupcake liners.

To make the crust, I mix the graham cracker crumbs with melted butter until the texture resembles wet sand. I press the mixture firmly into the bottom of each liner and bake for 5 minutes, then let it cool slightly.

For the filling, I beat the softened cream cheese with sugar until smooth and creamy. I add the egg, lime zest, and lime juice, and continue mixing until everything is fully incorporated.

I gently fold in the fresh blueberries to keep them whole and juicy.

If I decide to add the blueberry swirl, I mash the blueberries with sugar and spoon small amounts over the batter, then use a toothpick to create swirls.

I fill each liner with the cheesecake mixture over the pre-baked crusts. I bake for 15–18 minutes, until the centers are set but still slightly soft. After baking, I let them cool at room temperature, then chill them in the refrigerator for at least 2 hours.

For the topping, I beat the heavy cream with powdered sugar until fluffy peaks form. I pipe or spoon the whipped cream onto the chilled cupcakes and finish with a sprinkle of fresh lime zest before serving.

Servings and timing

This recipe makes approximately 10–12 cheesecake cupcakes, depending on how full I fill the liners.

Prep time: 20 minutes

Bake time: 15–18 minutes

Chilling time: 2 hours

Total time: About 2 hours 40 minutes

Variations

I sometimes swap blueberries for raspberries or chopped strawberries for a different berry twist. If I want a stronger citrus flavor, I add a little extra lime zest to the batter. For a more tropical version, I mix in a spoonful of shredded coconut into the crust.

When I want a richer texture, I replace a tablespoon of heavy cream in the whipped topping with mascarpone for extra stability.

Storage/Reheating

I store these cheesecake cupcakes in an airtight container in the refrigerator for up to 4 days. I keep them chilled until ready to serve since cheesecake tastes best cold.

If I need to make them ahead, I prepare the cupcakes without the whipped topping and add the topping just before serving. I do not reheat them, as they are meant to be enjoyed chilled.

FAQs

Can I use frozen blueberries instead of fresh?

I can use frozen blueberries, but I prefer to thaw and pat them dry first to prevent excess moisture from affecting the texture.

How do I know when the cheesecake cupcakes are done baking?

I look for set edges and a slightly soft center. The middle should not look wet, but it should still have a gentle jiggle.

Can I make these cupcakes ahead of time?

I often make them a day in advance. I keep them refrigerated and add the whipped topping before serving for the best texture.

What can I use instead of graham crackers?

I use digestive biscuits or vanilla wafer crumbs as an easy substitute with similar texture and flavor.

Can I freeze these cheesecake cupcakes?

I freeze them without the whipped topping in an airtight container for up to 2 months. I thaw them overnight in the refrigerator before serving.

Conclusion

I love how these Blueberry Lime Cheesecake Cupcakes deliver big flavor in a small package. The creamy filling, buttery crust, bright lime, and juicy blueberries come together beautifully. Whenever I make them, I feel like I am serving a refreshing dessert that looks elegant but is surprisingly simple to prepare.


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Blueberry Lime Cheesecake Cupcakes

Blueberry Lime Cheesecake Cupcakes


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  • Author: Cheryl
  • Total Time: 2 hours 40 minutes
  • Yield: 12 cupcakes
  • Diet: Vegetarian
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Description

These Blueberry Lime Cheesecake Cupcakes are creamy, tangy, and perfectly portioned with a buttery graham cracker crust, smooth lime-infused cheesecake filling, and bursts of juicy blueberries. Finished with whipped cream and fresh lime zest, they offer a refreshing citrus twist in every bite.


Ingredients

1 cup graham cracker crumbs (or digestive biscuits)

2 tbsp melted butter

8 oz (225g) cream cheese, softened

¼ cup sugar

1 egg

Zest of 1 lime

1 tbsp lime juice

½ cup fresh blueberries

¼ cup blueberries (for swirl, optional)

1 tbsp sugar (for swirl, optional)

½ cup heavy cream

2 tbsp powdered sugar

Lime zest for garnish


Instructions

  1. Preheat the oven to 325°F (160°C) and line a muffin tin with cupcake liners.
  2. In a bowl, mix the graham cracker crumbs with melted butter until the texture resembles wet sand. Press firmly into the bottom of each liner. Bake for 5 minutes, then cool slightly.
  3. Beat the softened cream cheese with sugar until smooth and creamy. Add the egg, lime zest, and lime juice, mixing until fully incorporated.
  4. Gently fold in the fresh blueberries.
  5. If making the blueberry swirl, mash the blueberries with sugar. Spoon small amounts over the batter and swirl gently with a toothpick.
  6. Divide the cheesecake mixture evenly over the pre-baked crusts. Bake for 15–18 minutes, until the edges are set and the centers are slightly soft.
  7. Cool at room temperature, then refrigerate for at least 2 hours until fully chilled.
  8. Beat the heavy cream with powdered sugar until soft peaks form. Pipe or spoon onto chilled cupcakes and garnish with fresh lime zest before serving.

Notes

Store in an airtight container in the refrigerator for up to 4 days.

Freeze without whipped topping for up to 2 months; thaw overnight in the refrigerator.

Substitute raspberries or chopped strawberries for blueberries if desired.

Add extra lime zest for a stronger citrus flavor.

Digestive biscuits or vanilla wafer crumbs can replace graham crackers.

  • Prep Time: 20 minutes
  • Cook Time: 18 minutes
  • Category: Dessert
  • Method: Bake
  • Cuisine: American

Nutrition

  • Serving Size: 1 cupcake
  • Calories: 220 kcal
  • Sugar: 14 g
  • Sodium: 160 mg
  • Fat: 16 g
  • Saturated Fat: 9 g
  • Unsaturated Fat: 6 g
  • Trans Fat: 0 g
  • Carbohydrates: 18 g
  • Fiber: 1 g
  • Protein: 4 g
  • Cholesterol: 55 mg

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Hey there! I’m Cheryl and if there’s one thing I’ve learned, it’s that food has a way of bringing people together.

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